Introduction The following are the codes for GO and KEGG enrichment. Code exmaple library(clusterProfiler) library(enrichplot) library(tidyverse) library(magrittr) library(data.table) library(org.Hs.eg.db) setwd(“/home/hxzk/project/XXX/KEGG/”)
Introduction The following are the codes for drawing a volcano plot with ggplot2 Code exmaple #Load package and read file
Tissue CellType Gene Full Name Gene Symbol Reference Epididymal Epithelial cells Principal cell Aquaporin9 Aqp9 [1-3] Epididymal Epithelial cells Principal
Introduction H5ad files were uploaded as available data in some paper of scRNA. But I always analysis scRNA data by
Introduction Here codes from P. Bischoff was showed. It concluded all step in analysis of scRNA, which could be refered
Introduction Somethimes we need to transform gene ID of MicroArray data to gene symbol. For example, "AFFX-LysX-3_at", we don’t known
Introduction Technological and computational advances in genomics and interactomics have made it possible to identify how disease mutations perturb protein–protein
Introduction NicheNet, a method that predicts ligand–target links between interacting cells by combining their expression data with prior knowledge on
Introduction RUVseq can conduct a differential expression (DE) analysis that controls for “unwanted variation”, e.g., batch, library preparation, and other