Introduction RUVseq can conduct a differential expression (DE) analysis that controls for “unwanted variation”, e.g., batch, library preparation, and other
Introduction Somethimes we need to replace multiple contents of vector in R , like I want to replace a to
Introduction Keras can now be called directly in tensorflow, because of the existence of the high-level API of keras, the
Introduction The bedgraph graph can be displayed using the plotBedgraph function of the Sushi package. However, we sometimes need to
Introduction The plotGenes of the Sushi package can plot gene structures, such as the visualization of several transcriptome structures. Code
Introduction The Manhattan chart can display the values of regions on multiple chromosomes. You can use the plotManhattan of the
Introduction The bed format is a common format for describing genomic regions. The area can be visualized through the plotBed
Introduction The BEDPE format can concisely describe disjoint genome features, such as structural variations or paired end sequence alignments. The
Introduction The HiC interaction matrix is the interaction score between two positions on the genome. The HiC interaction graph can
Introduction The display of bedgraph can use the plotBedgraph function of Sushi package Code explanation Input bedGraph formatdata frame head(Sushi_DNaseI.bedgraph)